Chowdhury, R., Wan, J., Gardier, R., Rafael-Patino, J., Thiran, J-P, Gibou, F., Mukherjee, A. Molecular imaging with aquaporin-based reporter genes: quantitative considerations from Monte Carlo diffusion simulations. (2023) bioRχiv pre-print: https://doi.org/10.1101/2023.06.09.544324

 

Yun, J., Baldini, L., Huang, Y., Li, E., Li, H., Chacko, A.N., Miller, A.D.C., Wan, J., Mukherjee, A. Engineering ligand stabilized aquaporin reporters for magnetic resonance imaging. (2023) bioRχiv pre-print: https://doi.org/10.1101/2023.06.02.543364

​

Lau, E.S., Goodheart, J.A., Anderson, N.T., Liu, V.L., Mukherjee, A. (co-corresponding), Oakley, T.H. (co-corresponding) Predictable genetic recruitment for luciferin sulfation in the convergent evolution of bioluminescence. (2023) bioRχiv pre-print: https://doi.org/10.1101/2023.04.12.536614

​

Maity, S., Price, B.D., Wilson, C.B., Mukherjee, A., Starck, M., Parker, D., Wilson, M.Z., Lovett, J.E., Han, S., Sherwin, M.S.  Triggered Functional Dynamics of AsLOV2 by Time-Resolved Electron Paramagnetic Resonance at High Magnetic Fields. Angewandte Chemie. (2023)  https://doi.org/10.1002/ange.202212832

​

Borg, R.E., Ozbakir, H.F., Xu, B., Li, E., Fang, X., Peng, H., Chen, I.A., Mukherjee, A. Genetically engineered filamentous phage for bacterial detection using magnetic resonance imaging. Sensors & Diagnostics. (2023) https://doi.org/10.1039/D3SD00026E. bioRχiv pre-print: https://doi.org/10.1101/2022.06.07.495091

​

Yun, J., Baldini, M., Chowdhury, R., Mukherjee, A. Designing Protein-based Probes for Sensing Biological Analytes with Magnetic Resonance Imaging. Analysis & Sensing. 2(5). (2022)  https://doi.org/10.1002/anse.202200019

​

Ozbakir, H.F., Miller, A.D.C., Fishman, K.B., Martins, A.F., Kippin, T.E., Mukherjee, A. A protein-based biosensor for detecting calcium by magnetic resonance imaging. ACS Sensors. 6(9). 3163-3169. (2021) https://doi.org/10.1021/acssensors.1c01085. Editor's Choice Article. bioRχiv pre-print: https://doi.org/10.1101/2021.02.04.429691

​

Ozbakir, H.F., Miller, A.D.C., Mukherjee, A. Calcium-responsive contrast agents for magnetic resonance imaging. Chemical Physics Reviews. 2(2). (2021). https://doi.org/10.1063/5.0041394. Editor's Pick for Featured Article 

 

Anderson, N.T., Weyant, K.B., Mukherjee, A. Characterization of flavin binding in oxygen-independent fluorescent reporters. AIChE J. 66(12). (2020)  https://doi.org/10.1002/aic.17083

​

Ozbakir, H.F., Anderson, N.T., Fan, K.C., Mukherjee, A. Beyond the Green Fluorescent Protein: Biomolecular Reporters for Anaerobic and Deep-Tissue Imaging. Bioconjugate Chem. 31(2). 293-302. (2020) https://doi.org/10.1021/acs.bioconjchem.9b00688

​

Prior to UCSB

​

Lu, G.J., Farhadi, A., Mukherjee, A., Shapiro, M.G. Proteins, air, and water: reporter genes for ultrasound and magnetic resonance imaging. Current Opinions in Chemical Biology. 45. 57-63. (2018) doi: 10.1016/j.cbpa.2018.02.011

​

Mukherjee, A., Davis, H., Ramesh, P., Lu, G., Shapiro, M.G. Biomolecular MRI reporters: evolution of new mechanisms. Progress in NMR Spectroscopy. 102-103. 32-42. (2017) doi: 10.1016/j.pnmrs.2017.05.002

​

Mukherjee, A., Wu, D., Davis, H., Shapiro, M.G. Non-invasive imaging using reporter genes altering cellular water permeability. Nature Communications. 7. 13891. (2016) doi: 10.1038/ncomms13891

​

Mukherjee, A. and Schroeder, C.M. Flavin-based Fluorescent Proteins: Emerging Paradigms in Biological Imaging. Current Opinions in Biotechnology. 31. 16-23. (2015) doi: 10.1016/j.copbio.2014.07.010

​

Mukherjee, A., Weyant, K.B., Agrawal, U., Walker, J., Schroeder, C.M. Engineering and Characterization of New LOV-based Fluorescent Reporter Proteins from Chlamydomonas reinhardtii and Vaucheria frigida. ACS Synthetic Biology. (2014) doi: 10.1021/sb500237x

​

Mukherjee, A., Walker, J., Weyant, K.B., Schroeder, C.M. Characterization of Flavin-based Fluorescent Proteins: an Emerging Class of Fluorescent Reporters. PLoS ONE. 8:5. (2013) doi:10.1371/journal.pone.0064753

​

Mohan, R.‡, Mukherjee, A.‡, Lee, J., Sevgen, S., Schroeder, C.M., Kenis, P.J.A. A Multiplexed Microfluidic Platform for Antibiotic Susceptibility Screening. Biosensors and Bioelectronics. 49:15. 118-125 (2013) doi:10.1016/j.bios.2013.04.046 (‡ denotes equal contribution)

​

Mukherjee, A., Weyant, K.B., Walker, J., Schroeder, C.M. Directed Evolution of Bright Mutants of a Flavin-binding Fluorescent Protein from Pseudomonas putida. Journal of Biol. Engineering. 6:20. (2012) doi: 10.1186/1754-1611-6-20

​

Schudel, B.R., Tanyeri, M., Mukherjee, A., Schroeder, C.M., Kenis, P.J.A. Multiplexed Detection of Nucleic Acids in a Combinatorial Screening Chip. Lab on a Chip. 11. 1916-23. (2011) doi: 10.1039/C0LC00342E

​

Rajagopala, S.V., Goll, J., Gowda, N.D.D., Sunil, K.C., Titz, B., Mukherjee, A., Mary, S.S., Raviswaran, N., et al. MPI-LIT-A Literature-curated Dataset of Microbial Binary Protein-Protein Interactions. Bioinformatics. 24. 2622-27. (2008) doi: 10.1093/bioinformatics/btn481